they have. It’s one of those self fulfilling prophecies for research. After Hurricane Sandy the NYU med center sustained a lot of damage. They got a really big check from the government to rebuild and that started shooting them up the ranks. As they rose that attracted more donor money. They build fancy new buildings and I think greatly increase their research faculty number, get more grant money. However, in terms of total NIH funding, NYU is still 25, with 100 million dollars across
219 awards in 2019. All of the T10 institutions by NIH funding alone have at least DOUBLE that across 360-520 awards, Hopkins had nearly triple and Harvard as well if you combine just HMS/Brigham/MGH. There are other details like public vs private, per capita vs bulk.
^ lot of data to play around with there
but ya mostly an academic exercise. To get at the OP, for the applicant any program with MSTP funding and designation is going to have a proven track record of success and not all MD/PhD programs have that so I would consider that set of ~40 programs to be the "top" MD/PhD programs. If you want to get granular for the sake of it, then I think you would have to create some kind of hybrid ranking that accounts for the NIH funding of individual departments across a variety of disciplines and find which program has generally the most funding across the most disciplines. If you did that, however, I dont think it would look too different from USNWR, although places like NYU would probably go down a bit and places like Michigan, Wisconsin would likely go up.